Hi @Dana_Bourke
Sorry for the inconvenience. We are working on fixing this issue. I will follow up on it again. Thank you for your understanding.
not sure if there is anyone reported or suggested,
is it possible keep the filled hole after merge?
Fill hole only works on meshes and merge only works on point clouds, so you’d have to fill holes after merge.
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thanks man 
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Easy fix. You have the scale different on your monitor than you do on the laptop screen. This is a windows setting and effects all kinds of programs negatively. Solidworks will outright crash when the scale doesn’t match from one to another.
Also, set your big monitor to the main monitor when you are in settings. This will only effect it when it’s connected, but makes the big monitor behave like the main when connected.
I noticed a slightly strange operation of the Overlap function (observed in version 5.5.3 for my Miraco Plus and 5.6.4 for MetroX) - I do it with the settings suggested by the program, “extra” points are deleted, then I set a value, for example, 0.05, start the search - and new points are found.. then I set 0.1, 0.15 and so on - and each step finds new points. It seems that this function does not work correctly - instead of searching for EVERYTHING that is greater than the threshold value, it searches for points only in a small range +/- from the set threshold value.
It can’t select everything at once as it will delete the important data as well .
If you want that use the quick edit processing . It will remove everything
Lose point detection is more for manual adjusting of lose fragments as not everyone want all lose points to be removed at once . Think about a objects that do not have all elements attached to the main scan .